title: “Metabarcoding – Examples” permalink: /projects/edna/metabarcoding/examples/ layout: single author_profile: true —

Examples

After downloading the package, it is recommended to go through the vignette, which highlights the important aspects of the package.

👉 Vignette

R script

This script analyses simulated metabarcoding data with:

• n = 100 sites
• S = 10 species
• M = 5 samples
• K = 12 qPCR tests

👉 R script

Simulated data

Used to fit and test the model:

• Simulated metabarcoding data

Additional datasets

For assessing model performance:

• True correlations
• Biomass data
• Output plots dataset

How to use

1. Download all files
2. Save them in your working directory
3. Run the R script to:
   • install required packages
   • fit the model
   • generate outputs and plots